PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG035562t1
Common NameTCM_035562
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family Trihelix
Protein Properties Length: 447aa    MW: 51349.1 Da    PI: 6.6787
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG035562t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix833.9e-26121217185
          trihelix   1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpy 81 
                       +Wt+++v++Li+a+++++e+   ++           +kk++W++vsk+m+erg+++sp+qC++k+++lnkrykk++++ +++ +++++++ ++
  Thecc1EG035562t1 121 KWTDKMVRLLITAVSYIGEDAAGDCgggmrrkfavlQKKGKWKSVSKVMAERGYHVSPQQCEDKFNDLNKRYKKLNDMLGRGtSCQVVENPAL 213
                       7****************9999988788888899999**********************************************56999988888 PP

          trihelix  82 fdql 85 
                       +d +
  Thecc1EG035562t1 214 LDVI 217
                       7765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.0E-24119244No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MEGNLSQGGM ISGGGSFGGL DVQGSMRVHH HAQHPHNIHQ HHHSNPRQGA SIHPSIHEGF  60
PLTMGTMQNC DQTIAMTDYN KGERRKSSVS DEDEPSFTEE GVDGHNDGTK GKKGSPWQRV  120
KWTDKMVRLL ITAVSYIGED AAGDCGGGMR RKFAVLQKKG KWKSVSKVMA ERGYHVSPQQ  180
CEDKFNDLNK RYKKLNDMLG RGTSCQVVEN PALLDVIDYL TEKEKDDVRK ILSSKHLFYE  240
EMCSYHNGNR LHLPHDPQLQ RSLQLALRSR DDHENDDARR HQHDDLDDDD HDMETDDHDE  300
FEENHALHGD SRGMYGVLGG SAKRSRQGQV HEDACFQNSL NSQDCNKSSF SYSPINQADM  360
NQVLPDNTRA AWLQKQWIES RSLQLEEQKL QIQVEMLELE KQRFKWQRFS KKRDRELEKM  420
RMENERMKLE NERMALELKR KEFAAD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007019480.10.0Sequence-specific DNA binding transcription factors
TrEMBLA0A061FHC20.0A0A061FHC2_THECC; Sequence-specific DNA binding transcription factors
STRINGPOPTR_0002s06930.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50422752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.11e-170sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]